FlexCryst: A Force Field Based Suite for Computational Crystallography

High-Performance Data Mining Force Fields for Advanced Crystallographic Simulations

FlexCryst is an integrated computational environment for the analysis and prediction of organic crystal packings. By employing high-performance Data Mining Force Fields extracted from the Cambridge Structural Database (CSD), FlexCryst offers a scientifically rigorous platform for researchers to bridge the gap between 2D molecular design and 3D crystalline reality.

🚀 New: AI-Ready Data Integrity Standard (CSD v5.46)

The CSD 2024 Screening Report is now available. This diagnostic dataset identifies inconsistent records in the latest CSD release, providing a curated foundation for robust machine learning applications and force field refinement.

View Full Compliance Report & Statistics

Program Modules

Convert Free
A high-fidelity transformation hub for crystallographic and simulation data. It facilitates seamless format exchange between CIF, CSSR, MOL2, PDB, and DL_POLY (*.poly). This module acts as a critical scientific bridge between commercial suites like Materials Studio and molecular dynamics solvers.

When the Strict Filter is active, the engine applies AI-compliance "Cleanser" logic to verify lattice energy stability, stoichiometric consistency (Z'), and interatomic clash thresholds, ensuring only physically valid structures are used in downstream MD simulations or neural network training.

Viewer Free
An advanced diagnostic visualization tool that provides a quantitative assessment of the crystal lattice. Beyond traditional rendering, it identifies all significant interatomic interactions—both stabilizing attractive contacts and destabilizing repulsions—based on statistical potentials. The module calculates precise distances and provides a breakdown of energy contributions, allowing for the immediate identification of structural anomalies in CIF, PDB, and RES files.
Utilizes a proprietary Similarity Index to enable the high-precision comparison of crystal structures. This algorithm goes beyond simple Cartesian RMSD by analyzing the coordination environment and symmetry-related motifs of the entire packing. It is an essential tool for clustering large structural ensembles, identifying polymorphs across different experimental sources, and quantifying the convergence of predicted models toward experimental targets.

Lattice Energy Evaluation & Solid-State Reactivity

The core analytical engine for the thermodynamic ranking of structural candidates. Utilizing the FlexCryst-DMT Force Field, this module performs rigorous gradient-based optimization to relax atomic coordinates to their local minima on the potential energy surface.

Predicting Co-Crystallization: Beyond simple ranking, the engine enables the prediction of chemical reactions between solids. It is engineered for extreme complexity, validated to rank systems with up to 50 independent molecules in the asymmetric unit—a technology successfully deployed for major pharmaceutical companies.

De Novo Crystal Structure Prediction (CSP)

Enables the blind prediction of crystal packings for rigid organic, organometallic, and inorganic compounds starting solely from the molecular diagram. The module features the FlexCryst-DMT Force Field as a high-performance default, ensuring immediate reliability across a wide range of chemical classes.

Thermodynamic Precision: While the default library is ready-to-use, potentials can be further tailored with the Optimize Potentials module. By identifying the global minima on the free-energy surface, Prediction provides a powerful platform for polymorph screening and the discovery of novel multi-component materials.

A specialized pre-processing module for X-ray powder diffraction (XRPD) data. It handles the critical task of transforming raw experimental scans into clean diffraction profiles. This includes automated background subtraction, line profile analysis, and peak fitting. By accounting for experimental broadening and noise, it prepares the diffraction data for accurate structural matching or full-pattern decomposition in the SDPD workflow.
Provides an automated solution for Structure Determination from Powder Diffraction (SDPD) data. By combining the FlexCryst similarity index with a global search algorithm, this module can identify the correct crystal packing even from un-indexed or low-resolution powder patterns. It simulates diffraction patterns for structural candidates and ranks them based on their fit to the experimental data, significantly accelerating the path from experimental scan to solved structure.

Custom Force Field Engineering

While FlexCryst provides a robust default library, this module allows users to derive or tailor-fit the FlexCryst-DMT Force Field to specific research needs. By screening up to a million crystal structures, it extracts statistically robust potentials refined through a four-stage thermodynamic protocol.

This enables the creation of specialized potentials for unique chemical spaces, ensuring that the thermodynamic ranking in the Score and Prediction modules is always optimized for the highest possible accuracy.

Scientific Publications & Foundations

  • "Data mining. I. Machine learning in crystallography" (2022).
    D.W.M. Hofmann & L.N. Kuleshova.
    International Tables for Crystallography, Vol. C, it.iucr.org/Cc/wf5158/.
  • "A general force field by machine learning on experimental crystal structures" (2023).
    Acta Crystallographica Section B: Structural Science, 79(2).
  • "A new similarity index for crystal structure determination from X-ray powder diagrams" (2005).
    Journal of Applied Crystallography, 38, 861-866.

Full Bibliography on Google Scholar

Download & Installation

Installers will automatically configure FlexCryst. Requirement: Java 17.

Java Tools Suite (Free) ☕

Viewer, Analyzer & Conversion. Requires EULA acceptance.

Linux Terminal: chmod +x installation.sh && ./installation.sh
Windows PowerShell: powershell.exe -ExecutionPolicy Bypass -File .\installation.ps1

Scientific Suite 🔬

Includes CSD-based test examples. Requires EULA and CSD license confirmation.

Linux Terminal: chmod +x installation.sh && ./installation.sh
Windows PowerShell: powershell.exe -ExecutionPolicy Bypass -File .\installation.ps1

Contact

Dr. Detlef W.M. Hofmann
Email: